| Year | Champion |
| 1986-87 | Scarborough |
| 1987-88 | Lincoln City |
| 1988-89 | Maidstone United |
| 1989-90 | Darlington |
| 1990-91 | Barnet |
| 1991-92 | Colchester United |
| 1992-93 | Wycombe Wanderers |
| 1993-94 | Kidderminster Harriers |
| 1994-95 | Macclesfield Town |
| 1995-96 | Stevenage Borough |
| 1996-97 | Macclesfield Town |
| 1997-98 | Halifax Town |
| 1998-99 | Cheltenham Town |
| 1999-00 | Kidderminster Harriers |
| 2000-01 | Rushden and Diamonds |
| 2001-02 | Boston United |
| 2002-03 | Yeovil Town |
| 2003-04 | Chester City |
| 2004-05 | Barnet |
| 2005-06 | Accrington Stanley |
| 2006-07 | Dagenham and Redbridge |
| 2007-08 | Aldershot Town |
| 2008-09 | Burton Albion |
| 2009-10 | Stevenage Borough |
| 2010-11 | Crawley Town |
| 2011-12 | Fleetwood Town |
| 2012-13 | Mansfield Town |
| 2013-14 | Luton Town |
| 2014-15 | Barnet |
| 2015-16 | Cheltenham Town |
| 2016-17 | Lincoln City |
| 2017-18 | Macclesfield Town |
| 2018-19 | Leyton Orient |
| 2019-20 | Barrow |
| 2020-21 | Sutton United |
| 2021-22 | Stockport County |
| 2022-23 | Wrexham |