| Year | Champion |
| 1997-98 | FC Flora Tallinn |
| 1998 | FC Flora Tallinn |
| 1999 | FC Levadia Maardu |
| 2000 | FC Levadia Maardu |
| 2001 | FC Flora Tallinn |
| 2002 | FC Flora Tallinn |
| 2003 | FC Flora Tallinn |
| 2004 | FC Levadia Tallinna |
| 2005 | FC TVMK Tallinn |
| 2006 | FC Levadia Tallinna |
| 2007 | FC Levadia Tallinna |
| 2008 | FC Levadia Tallinna |
| 2009 | FC Levadia Tallinna |
| 2010 | FC Flora Tallinn |
| 2011 | FC Flora Tallinn |
| 2012 | JK Kalju Nõmme |
| 2013 | FC Levadia Tallinna |
| 2014 | FC Levadia Tallinna |