| Year | Champion |
| 1999-00 | Athinaikos Vironas |
| 2000-01 | Aigaleo Athinai |
| 2001-02 | PAS Giannina |
| 2002-03 | AO Chalkidona |
| 2003-04 | Kerkyra AO |
| 2004-05 | AE Larissa |
| 2006-07 | Asteras Tripolis |
| 2007-08 | Panserraikos 1964 FC |
| 2008-09 | Atromitos Athinon |
| 2009-10 | Olympiakos Volos |
| 2010-11 | Panaitolikos Agriniou |
| 2011-12 | Panthrakikos |
| 2012-13 | Apollon Smyrnis |