| # | Estonian Esiliiga | G | W | D | L | GF | GA | Pts | +- | ||
| - | FC Levadia Tallinna II | 36 | 26 | 8 | 2 | 96 | 21 | 86 | 75 | ||
| ^ | FC Lootus Kohtla-Järve | 36 | 24 | 2 | 10 | 88 | 48 | 74 | 40 | Promoted | |
| - | FC Valga | 36 | 21 | 2 | 13 | 68 | 63 | 65 | 5 | ||
| - | FC Ajax Lasnamäe | 36 | 20 | 4 | 12 | 75 | 53 | 64 | 22 | ||
| - | Kiviõli FC Irbis* | 36 | 17 | 2 | 17 | 77 | 77 | 50 | 0 | ||
| - | Tallinna JK Legion | 36 | 13 | 5 | 18 | 63 | 76 | 44 | -13 | ||
| - | JK Vaprus Pärnu | 36 | 11 | 6 | 19 | 64 | 77 | 39 | -13 | ||
| - | JK Tulevik II Viljandi | 36 | 10 | 6 | 20 | 49 | 79 | 36 | -30 | ||
| * | FC Flora Tallinn II | 36 | 9 | 5 | 22 | 35 | 64 | 32 | -29 | Relegated | |
| - | Rakvere FC Flora* | 36 | 8 | 2 | 26 | 48 | 105 | 20 | -57 |