| # | Estonian Esiliiga | G | W | D | L | GF | GA | Pts | +- | ||
| - | FC Levadia Tallinna II | 36 | 20 | 10 | 6 | 94 | 41 | 70 | 53 | ||
| ^ | Jõhvi FC Lokomotiv | 36 | 20 | 9 | 7 | 80 | 39 | 69 | 41 | Promoted | |
| - | FC Flora Tallinn II | 36 | 17 | 6 | 13 | 56 | 54 | 57 | 2 | ||
| - | Rakvere JK Tarvas | 36 | 16 | 8 | 12 | 68 | 58 | 56 | 10 | ||
| - | Tartu SK 10 | 36 | 17 | 3 | 16 | 58 | 67 | 54 | -9 | ||
| - | JK Tammeka Tartu II | 36 | 15 | 7 | 14 | 70 | 57 | 52 | 13 | ||
| - | Vändra JK Vaprus | 36 | 12 | 10 | 14 | 61 | 55 | 46 | 6 | ||
| - | JK Tulevik Viljandi | 36 | 12 | 10 | 14 | 46 | 57 | 46 | -11 | ||
| * | FC Puuma | 36 | 8 | 5 | 23 | 40 | 91 | 29 | -51 | Relegated | |
| * | Kiviõli FC Irbis | 36 | 7 | 4 | 25 | 60 | 114 | 25 | -54 | Relegated |