| # | Estonian Esiliiga | G | W | D | L | GF | GA | Pts | +- | ||
| - | FC Flora Tallinn II | 36 | 24 | 6 | 6 | 104 | 40 | 78 | 64 | ||
| - | FC Levadia Tallinna II | 36 | 20 | 8 | 8 | 102 | 52 | 68 | 50 | ||
| ^ | Pärnu linnameeskond | 36 | 19 | 3 | 14 | 109 | 78 | 60 | 31 | Promoted | |
| - | JK Kalju Nõmme II | 36 | 17 | 6 | 13 | 69 | 62 | 57 | 7 | ||
| JK Tulevik Viljandi | 36 | 14 | 9 | 13 | 53 | 51 | 51 | 2 | Promoted | ||
| - | FC Kuressaare | 36 | 14 | 5 | 17 | 69 | 81 | 47 | -12 | ||
| - | Kiviõli FC Irbis | 36 | 12 | 11 | 13 | 72 | 82 | 47 | -10 | ||
| - | Rakvere JK Tarvas | 36 | 12 | 10 | 14 | 61 | 65 | 46 | -4 | ||
| * | Vändra JK Vaprus | 36 | 11 | 5 | 20 | 60 | 72 | 38 | -12 | Relegated | |
| * | FC Puuma* | 36 | 2 | 7 | 27 | 32 | 148 | 10 | -116 | Relegated |