The all-time table uses three points for a win and one point for a draw, and does not consider point deductions

Rank	Team	Seasons	G	W	D	L	GF	GA	Pts	Pts/Game	+-	+-/game	Champions	Relegated
1	FC Flora Tallinn	18	566	391	92	83	1495	492	1265	2.2350	1003	1.7721	7	0
2	FC Levadia Tallinna	16	528	391	90	47	1448	361	1263	2.3920	1087	2.0587	9	0
3	JK Narva Trans	18	566	287	104	175	1133	718	965	1.7049	415	0.7332	0	0
4	FC TVMK Tallinn	12	350	198	66	86	868	402	660	1.8857	466	1.3314	1	1
5	JK Kalju Nõmme	7	252	152	48	52	540	235	504	2.0000	305	1.2103	1	0
6	JK Tulevik Viljandi	14	422	136	82	204	552	713	490	1.1611	-161	-0.3815	0	0
7	JK Kalev Sillamäe	7	252	135	38	79	524	329	443	1.7579	195	0.7738	0	0
8	JK Tammeka Tartu	8	288	68	51	169	328	602	255	0.8854	-274	-0.9514	0	1
9	Paide linnameeskond	6	216	60	36	120	207	404	216	1.0000	-197	-0.9120	0	0
10	FC Kuressaare	10	336	48	43	245	253	920	187	0.5565	-667	-1.9851	0	4
11	JK Tallinna Kalev	6	216	40	32	144	196	546	152	0.7037	-350	-1.6204	0	2
12	Tartu JK Maag Tammeka	3	108	40	21	47	164	184	141	1.3056	-20	-0.1852	0	0
13	FC Infonet	2	72	29	17	26	116	100	104	1.4444	16	0.2222	0	0
14	FC Lantana Tallinn	3	66	22	20	24	95	106	86	1.3030	-11	-0.1667	0	0
15	FC Lootus Kohtla-Järve	5	148	22	19	107	104	394	85	0.5743	-290	-1.9595	0	1
16	FC Valga	5	156	21	18	117	120	425	81	0.5192	-305	-1.9551	0	2
17	JK Tallinna Sadam	2	38	25	6	7	116	47	81	2.1316	69	1.8158	0	0
18	Pärnu linnameeskond	3	108	23	7	78	125	307	76	0.7037	-182	-1.6852	0	0
19	JK Merkuur Tartu	2	64	21	12	31	99	144	75	1.1719	-45	-0.7031	0	0
20	FC Levadia Tallinna II	3	84	20	14	50	106	211	74	0.8810	-105	-1.2500	0	0
21	FC Viljandi	2	72	14	14	44	70	157	56	0.7778	-87	-1.2083	0	0
22	JK Tervis Pärnu	3	56	8	13	35	46	118	37	0.6607	-72	-1.2857	0	2
23	FC Ajax Lasnamäe	3	108	7	13	88	60	449	34	0.3148	-389	-3.6019	0	2
24	Eesti Põlevkivi Jõhvi	3	56	6	12	38	33	148	30	0.5357	-115	-2.0536	0	1
25	Jõhvi FC Lokomotiv	1	36	4	6	26	35	115	18	0.5000	-80	-2.2222	0	1
26	JK Dünamo Tallinn	1	36	3	3	30	28	157	12	0.3333	-129	-3.5833	0	1
27	FC Levadia Pärnu	1	28	1	5	22	19	96	8	0.2857	-77	-2.7500	0	1