The all-time table uses three points for a win and one point for a draw, and does not consider point deductions

Rank	Team	Seasons	G	W	D	L	GF	GA	Pts	Pts/Game	+-	+-/game	Champions	Relegated
1	FC St. Pauli	24	842	322	242	278	1179	1100	1208	1.4347	79	0.0938	0	2
2	SpVgg Greuther Fürth	24	824	319	245	260	1197	1047	1202	1.4587	150	0.1820	1	1
3	MSV Duisburg	22	784	294	218	272	1128	1074	1100	1.4031	54	0.0689	0	3
4	Alemannia Aachen	21	750	302	192	256	1076	1011	1098	1.4640	65	0.0867	0	2
5	SC Freiburg	19	696	301	193	202	1090	887	1096	1.5747	203	0.2917	4	0
6	Hannover 96	18	654	259	197	198	1052	889	974	1.4893	163	0.2492	2	1
7	Fortuna Köln	19	690	245	190	255	1054	1043	925	1.3406	11	0.0159	0	1
8	Karlsruher SC	19	658	246	179	233	937	904	917	1.3936	33	0.0502	2	3
9	Stuttgarter Kickers	16	596	238	153	205	926	791	867	1.4547	135	0.2265	1	2
10	1. FSV Mainz 05	17	600	226	184	190	849	768	862	1.4367	81	0.1350	0	1
11	Hertha BSC	14	514	210	157	147	803	620	787	1.5311	183	0.3560	3	1
12	VfL Bochum	15	514	214	141	159	765	655	783	1.5233	110	0.2140	3	0
13	Arminia Bielefeld	16	556	205	164	187	807	751	779	1.4011	56	0.1007	2	3
14	Darmstadt 98	15	556	199	164	193	773	795	761	1.3687	-22	-0.0396	0	1
15	TSV Eintracht Braunschweig	16	574	198	163	213	741	752	757	1.3188	-11	-0.0192	0	5
16	TSV 1860 München	16	550	201	152	197	741	692	755	1.3727	49	0.0891	0	4
17	VfL Osnabrück	17	624	195	168	261	845	1007	753	1.2067	-162	-0.2596	0	6
18	Fortuna Düsseldorf	14	496	194	137	165	711	633	719	1.4496	78	0.1573	2	2
19	1. FC Saarbrücken	14	506	186	144	176	713	742	702	1.3874	-29	-0.0573	1	3
20	1. FC Nürnberg	13	446	195	114	137	687	559	699	1.5673	128	0.2870	3	1
21	Waldhof Mannheim	13	468	178	146	144	672	613	680	1.4530	59	0.1261	1	2
22	Rot-Weiß Oberhausen	15	530	169	135	226	692	810	642	1.2113	-118	-0.2226	0	3
23	Wattenscheid 09	13	478	167	128	183	701	728	629	1.3159	-27	-0.0565	0	2
24	1. FC Union Berlin	13	442	163	132	147	635	605	621	1.4050	30	0.0679	0	1
25	FC Erzgebirge Aue	14	476	157	124	195	574	661	595	1.2500	-87	-0.1828	0	2
26	1. FC Kaiserslautern	11	374	150	118	106	543	413	568	1.5187	130	0.3476	2	1
27	1. FC Köln	9	306	150	83	73	530	364	533	1.7418	166	0.5425	4	0
28	SV Meppen	11	404	124	139	141	495	547	511	1.2649	-52	-0.1287	0	1
29	Energie Cottbus	11	374	134	103	137	510	490	505	1.3503	20	0.0535	0	1
30	SpVgg Unterhaching	11	390	132	108	150	472	495	504	1.2923	-23	-0.0590	0	4
31	SC Paderborn 07	11	378	129	101	148	498	563	488	1.2910	-65	-0.1720	0	3
32	SC Rot-Weiß Essen	12	406	121	116	169	555	637	479	1.1798	-82	-0.2020	0	6
33	Kickers Offenbach	9	326	115	86	125	454	500	431	1.3221	-46	-0.1411	0	4
34	FC Homburg	8	302	111	88	103	414	371	421	1.3940	43	0.1424	1	1
35	KSV Hessen Kassel	7	266	113	58	95	398	373	397	1.4925	25	0.0940	0	2
36	Hansa Rostock	8	288	103	79	106	383	378	388	1.3472	5	0.0174	1	2
37	Blau-Weiß 90 Berlin	7	260	98	85	77	405	350	379	1.4577	55	0.2115	0	1
38	1. FC Union Solingen	8	304	98	77	129	422	533	371	1.2204	-111	-0.3651	0	1
39	Dynamo Dresden	9	306	95	84	127	376	456	369	1.2059	-80	-0.2614	0	3
40	FSV Frankfurt	10	344	93	86	165	412	607	365	1.0610	-195	-0.5669	0	3
41	Eintracht Frankfurt	6	204	101	56	47	345	227	359	1.7598	118	0.5784	1	0
42	KFC Uerdingen 05	7	248	97	65	86	324	301	356	1.4355	23	0.0927	1	1
43	FC Carl Zeiss Jena	8	286	85	92	109	360	424	347	1.2133	-64	-0.2238	0	3
44	FC Schalke 04	5	190	94	54	42	356	211	336	1.7684	145	0.7632	2	0
45	FC Ingolstadt 04	8	272	83	86	103	334	366	335	1.2316	-32	-0.1176	1	2
46	Rot Weiss Ahlen	8	272	87	62	123	341	439	323	1.1875	-98	-0.3603	0	2
47	SV Sandhausen	8	272	80	81	111	303	354	321	1.1801	-51	-0.1875	0	1
48	Chemnitzer FC	7	252	81	73	98	289	358	316	1.2540	-69	-0.2738	0	2
49	FC Augsburg	6	208	81	57	70	275	250	300	1.4423	25	0.1202	0	1
50	VfB Leipzig	6	214	78	58	78	271	285	292	1.3645	-14	-0.0654	0	1
51	1. FC Heidenheim	6	204	76	61	67	284	260	289	1.4167	24	0.1176	0	0
52	VfL Wolfsburg	5	186	70	66	50	256	229	276	1.4839	27	0.1452	0	0
53	SSV Ulm 1846	6	220	64	58	98	317	396	250	1.1364	-79	-0.3591	0	3
54	SV Wacker Burghausen	5	170	54	54	62	223	247	216	1.2706	-24	-0.1412	0	1
55	SpVgg Bayreuth	5	190	55	41	94	241	334	206	1.0842	-93	-0.4895	0	3
56	SSV Jahn Regensburg	5	170	50	48	72	231	279	198	1.1647	-48	-0.2824	0	2
57	FC Remscheid	5	192	47	51	94	232	358	192	1.0000	-126	-0.6563	0	3
58	Borussia Mönchengladbach	3	101	48	35	18	193	112	179	1.7723	81	0.8020	1	0
59	VfB Oldenburg	4	150	40	49	61	204	249	169	1.1267	-45	-0.3000	0	2
60	Tennis Borussia Berlin	4	144	42	40	62	179	222	166	1.1528	-43	-0.2986	0	2
61	VfB Lübeck	4	136	43	34	59	170	205	163	1.1985	-35	-0.2574	0	2
62	TuS Koblenz	4	136	41	37	58	164	209	160	1.1765	-45	-0.3309	0	1
63	FSV Zwickau	4	136	39	36	61	137	201	153	1.1250	-64	-0.4706	0	1
64	Holstein Kiel	3	102	38	34	30	184	151	148	1.4510	33	0.3235	0	0
65	FC Gütersloh	3	102	35	32	35	125	135	137	1.3431	-10	-0.0980	0	1
66	SSV Reutlingen	3	102	39	19	44	160	162	136	1.3333	-2	-0.0196	0	1
67	SV Eintracht Trier 05	3	102	35	27	40	138	150	132	1.2941	-12	-0.1176	0	1
68	VfB Stuttgart	2	68	38	13	17	125	78	127	1.8676	47	0.6912	1	0
69	Viktoria Aschaffenburg	3	114	32	29	53	151	191	125	1.0965	-40	-0.3509	0	2
70	VfR Aalen	3	102	30	33	39	110	124	123	1.2059	-14	-0.1373	0	1
71	RB Leipzig	2	68	33	18	17	93	63	117	1.7206	30	0.4412	0	0
72	Hamburger SV	2	68	30	20	18	107	88	110	1.6176	19	0.2794	0	0
73	SV Wehen Wiesbaden	3	102	25	30	47	120	167	105	1.0294	-47	-0.4608	0	2
74	Wuppertaler SV	2	84	26	24	34	99	102	102	1.2143	-3	-0.0357	0	1
75	Preußen Münster	2	76	21	23	32	80	124	86	1.1316	-44	-0.5789	0	1
76	TSG 1899 Hoffenheim	1	34	17	9	8	60	40	60	1.7647	20	0.5882	0	0
77	Rot-Weiß Erfurt	2	66	12	16	38	70	135	52	0.7879	-65	-0.9848	0	2
78	VfR Bürstadt	1	38	12	7	19	48	56	43	1.1316	-8	-0.2105	0	1
79	SC Charlottenburg	1	38	10	9	19	49	68	39	1.0263	-19	-0.5000	0	1
80	1. FC Schweinfurt 05	2	72	8	15	49	56	165	39	0.5417	-109	-1.5139	0	2
81	Hallescher FC	1	32	7	13	12	35	47	34	1.0625	-12	-0.3750	0	1
82	Würzburger Kickers	1	34	7	13	14	32	41	34	1.0000	-9	-0.2647	0	1
83	Wormatia Worms	1	38	8	8	22	34	74	32	0.8421	-40	-1.0526	0	1
84	Stahl Brandenburg	1	32	8	7	17	37	53	31	0.9688	-16	-0.5000	0	1
85	1. FC Magdeburg	1	34	6	13	15	35	53	31	0.9118	-18	-0.5294	0	1
86	Sportfreunde Siegen	1	34	8	7	19	35	54	31	0.9118	-19	-0.5588	0	1
87	Freiburger FC	1	38	7	9	22	52	88	30	0.7895	-36	-0.9474	0	1
88	FSV Salmrohr	1	38	4	13	21	48	94	25	0.6579	-46	-1.2105	0	1
89	TSV Havelse	1	38	6	7	25	44	82	25	0.6579	-38	-1.0000	0	1
90	SV Babelsberg 03	1	34	4	6	24	39	82	18	0.5294	-43	-1.2647	0	1