The all-time table uses three points for a win and one point for a draw, and does not consider point deductions

Rank	Team	Seasons	G	W	D	L	GF	GA	Pts	Pts/Game	+-	+-/game	Champions	Relegated
1	ŽP Šport Podbrezová	6	169	97	44	28	265	115	335	1.9822	150	0.8876	1	0
2	MFK Zemplín Michalovce	7	225	88	45	92	286	289	309	1.3733	-3	-0.0133	0	0
3	MŠK Rimavská Sobota	7	225	83	58	84	252	260	307	1.3644	-8	-0.0356	0	0
4	Slovan Duslo Šala	6	192	57	44	91	186	264	215	1.1198	-78	-0.4063	0	1
5	LAFC Lucenec	5	159	58	35	66	210	230	209	1.3145	-20	-0.1258	0	1
6	ŠK SFM Senec	4	132	55	39	38	167	136	204	1.5455	31	0.2348	0	0
7	AS Trencín	3	93	54	26	13	204	78	188	2.0215	126	1.3548	1	0
8	MFK Tatran Liptovský Mikuláš	5	159	47	32	80	155	225	173	1.0881	-70	-0.4403	0	1
9	MFK Dolný Kubín	4	126	45	33	48	161	153	168	1.3333	8	0.0635	0	1
10	MFK Ružomberok B	4	126	42	29	55	151	180	155	1.2302	-29	-0.2302	0	0
11	1.FC Tatran Prešov	2	66	41	14	11	120	42	137	2.0758	78	1.1818	1	0
12	MFK Dubnica nad Váhom	3	99	31	26	42	93	133	119	1.2020	-40	-0.4040	0	0
13	Inter Bratislava	2	65	33	18	14	110	65	117	1.8000	45	0.6923	1	0
14	Partizán Bardejov	2	66	33	15	18	90	61	114	1.7273	29	0.4394	0	0
15	FC Baník Horná Nitra	2	66	24	17	25	89	96	89	1.3485	-7	-0.1061	0	0
16	FK Bodva Moldava nad Bodvou	2	66	22	23	21	76	75	89	1.3485	1	0.0152	0	0
17	HFC Humenné	2	66	19	18	29	65	88	75	1.1364	-23	-0.3485	0	0
18	FC ŠTK 1914 Šamorin	2	66	18	18	30	62	87	72	1.0909	-25	-0.3788	0	1
19	FK Púchov	2	60	21	9	30	62	108	72	1.2000	-46	-0.7667	0	1
20	Spartak Myjava	1	33	20	11	2	64	16	71	2.1515	48	1.4545	1	0
21	FC Petržalka 1898	2	66	17	19	30	77	90	70	1.0606	-13	-0.1970	0	1
22	FK DAC Dunajská Streda	1	33	19	8	6	41	26	65	1.9697	15	0.4545	1	0
23	MFK Košice B	2	66	16	15	35	73	104	63	0.9545	-31	-0.4697	0	1
24	FC ViOn Zlaté Moravce	1	27	18	5	4	54	21	59	2.1852	33	1.2222	1	0
25	FC Spartak Trnava B	1	33	10	9	14	57	64	39	1.1818	-7	-0.2121	0	0
26	FK Pohronie Žiar nad Hronom	1	33	10	4	19	38	60	34	1.0303	-22	-0.6667	0	0
27	Slavoj Trebišov	1	33	9	7	17	31	60	34	1.0303	-29	-0.8788	0	1
28	TJ Banik Ružiná	1	33	7	9	17	38	54	30	0.9091	-16	-0.4848	0	1
29	MFK Goral Stará Lubovna	1	33	7	9	17	35	58	30	0.9091	-23	-0.6970	0	1
30	FK Mesto Prievidza	1	17	4	6	7	13	20	18	1.0588	-7	-0.4118	0	0
31	DAC Dunajská Streda B	1	33	2	4	27	18	92	10	0.3030	-74	-2.2424	0	1